Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00130.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3187
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29


Found at i:3004 original size:15 final size:15

Alignment explanation


    Indices: 2984--3012  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       2974 GAAGTGGACT

                           
       2984 TGTCTTCCAACTCAG
          1 TGTCTTCCAACTCAG

                          
       2999 TGTCTTCCAACTCA
          1 TGTCTTCCAACTCA

       3013 AGGGCAAAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.21, C:0.34, G:0.10, T:0.34


Consensus pattern (15 bp):   
TGTCTTCCAACTCAG
Done.