Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00143.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4277
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31


Found at i:2943 original size:189 final size:189

Alignment explanation


    Indices: 2611--3129  Score: 650
    Period size: 189  Copynumber: 2.7  Consensus size: 189

       2601 GTTGGAATCA

                *       *                                *                *  
       2611 CTTCATGATCTGGATCTTAGTCATTGCCCAATAGCCGAATTCCCAAAAATCCCAAGAAGCTTGAC
          1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAATTCCCAGAAATCCCAAGAAGCTTAAC

                             *               *    *        *    *            
       2676 AGAATTAAACTTATCTGAAACTCAAATTGAAGATGTGTGCTTGTCTAGCGACACTCCAAGCAATC
         66 AGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAATC

                               *        *                           **  
       2741 TTCAGAAGTTAGATATGAGTGGCTCAAGGGTGAAA-AATGTATCCATCAAGATGGATTCC
        131 TTCAGAAGTTAGATATGAGGGGCTCAAGAGT-AAAGAATGTATCCATCAAGATGGAAGCC

                                              * *                      *     
       2800 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGTCAAATTTCCC-GAAATCCCAAGAACCTTAA
          1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAA-TTCCCAGAAATCCCAAGAAGCTTAA

              *    *                          *            *        ** *     
       2864 CAAAATTGAACTTATCTGGAACTCAAATTGAAGAGGTGTCCTTGTCTCTCGACTCTGTAGGCAAT
         65 CAGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAAT

                                                         *               
       2929 CTTCA-AACGTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCGATCAAGATGGAAGCC
        130 CTTCAGAA-GTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCCATCAAGATGGAAGCC

              *                              *                              *
       2989 CTCCGTGATCTGAATCTTAGTCATTGCCCAATAACCGAATTCCCAGAAATCCCAAGAAGCTTAAG
          1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAATTCCCAGAAATCCCAAGAAGCTTAAC

                     *        *                   *        * *       *  **   
       3054 AGAATTAAATTTATCTGGGACTCAAATT-AAGGAAGTGACCTTGTCTTTAGACTCTCTAAATAAT
         66 AGAATTAAACTTATCTGGAACTCAAATTGAA-GAAGTGTCCTTGTCTATCGACTCTCCAAGCAAT

                   *    
       3118 CTTCAGATGTTA
        130 CTTCAGAAGTTA

       3130 AAGATGAGCT


Statistics
Matches: 282,  Mismatches: 42, Indels: 12
        0.84            0.12        0.04

Matches are distributed among these distances:
 188   12  0.04
 189  264  0.94
 190    6  0.02

ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Consensus pattern (189 bp):   
CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAATTCCCAGAAATCCCAAGAAGCTTAAC
AGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAATC
TTCAGAAGTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCCATCAAGATGGAAGCC

Done.