Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00143.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3120
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:1696 original size:189 final size:189

Alignment explanation


    Indices: 1364--1882  Score: 650
    Period size: 189  Copynumber: 2.7  Consensus size: 189

       1354 GTTGGAATCA

                *       *                                *                *  
       1364 CTTCATGATCTGGATCTTAGTCATTGCCCAATAGCCGAATTCCCAAAAATCCCAAGAAGCTTGAC
          1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAATTCCCAGAAATCCCAAGAAGCTTAAC

                             *               *    *        *    *            
       1429 AGAATTAAACTTATCTGAAACTCAAATTGAAGATGTGTGCTTGTCTAGCGACACTCCAAGCAATC
         66 AGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAATC

                               *        *                           **  
       1494 TTCAGAAGTTAGATATGAGTGGCTCAAGGGTGAAA-AATGTATCCATCAAGATGGATTCC
        131 TTCAGAAGTTAGATATGAGGGGCTCAAGAGT-AAAGAATGTATCCATCAAGATGGAAGCC

                                              * *                      *     
       1553 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGTCAAATTTCCC-GAAATCCCAAGAACCTTAA
          1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAA-TTCCCAGAAATCCCAAGAAGCTTAA

              *    *                          *            *        ** *     
       1617 CAAAATTGAACTTATCTGGAACTCAAATTGAAGAGGTGTCCTTGTCTCTCGACTCTGTAGGCAAT
         65 CAGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAAT

                                                         *               
       1682 CTTCA-AACGTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCGATCAAGATGGAAGCC
        130 CTTCAGAA-GTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCCATCAAGATGGAAGCC

              *                              *                              *
       1742 CTCCGTGATCTGAATCTTAGTCATTGCCCAATAACCGAATTCCCAGAAATCCCAAGAAGCTTAAG
          1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAATTCCCAGAAATCCCAAGAAGCTTAAC

                     *        *                   *        * *       *  **   
       1807 AGAATTAAATTTATCTGGGACTCAAATT-AAGGAAGTGACCTTGTCTTTAGACTCTCTAAATAAT
         66 AGAATTAAACTTATCTGGAACTCAAATTGAA-GAAGTGTCCTTGTCTATCGACTCTCCAAGCAAT

                   *    
       1871 CTTCAGATGTTA
        130 CTTCAGAAGTTA

       1883 AAGATGAGCT


Statistics
Matches: 282,  Mismatches: 42, Indels: 12
        0.84            0.12        0.04

Matches are distributed among these distances:
 188   12  0.04
 189  264  0.94
 190    6  0.02

ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Consensus pattern (189 bp):   
CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCCGAATTCCCAGAAATCCCAAGAAGCTTAAC
AGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAATC
TTCAGAAGTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCCATCAAGATGGAAGCC

Done.