Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00144.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4100
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:4051 original size:16 final size:17

Alignment explanation


    Indices: 4021--4054  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       4011 AGAAAAATTA

                      *      
       4021 TTAAAATATTTTTATAT
          1 TTAAAATATTATTATAT

                             
       4038 TTAAAATA-TATTATAT
          1 TTAAAATATTATTATAT

             
       4054 T
          1 T

       4055 ATTAGATGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    8  0.50
  17    8  0.50

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (17 bp):   
TTAAAATATTATTATAT

Found at i:4057 original size:19 final size:18

Alignment explanation


    Indices: 4017--4057  Score: 50
    Period size: 17  Copynumber: 2.3  Consensus size: 18

       4007 AATTAGAAAA

                            * 
       4017 ATTA-TTAAAATATTTTT
          1 ATTATTTAAAATATTTAT

                               
       4034 A-TATTTAAAATATATTAT
          1 ATTATTTAAAATAT-TTAT

                  
       4052 ATTATT
          1 ATTATT

       4058 AGATGTTATC


Statistics
Matches: 20,  Mismatches: 1, Indels: 4
        0.80            0.04        0.16

Matches are distributed among these distances:
  16    2  0.10
  17   10  0.50
  18    4  0.20
  19    4  0.20

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (18 bp):   
ATTATTTAAAATATTTAT
Done.