Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00153.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4583
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32


Found at i:2887 original size:189 final size:189

Alignment explanation


    Indices: 2567--3085  Score: 833
    Period size: 189  Copynumber: 2.7  Consensus size: 189

       2557 GCGGTTGCCC

                                          *                       *          
       2567 AATTGAAGAAGTGTCGTTGCCTTTCGACCCCCTATGTAATCTTCAGCACTTAAAAATGAGTGGCT
          1 AATTGAAGAAGTGTCGTTGCCTTTCGACCCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT

                                                                             
       2632 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
         66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA

                  *                  *                                 
       2697 ATGGTCAAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
        131 ATGGTCGAATTTCCAGAAATCCCAGAAAGCTTAATAAAATTAAACTTATCTGGCACTCA

                   *                    *                  **                
       2756 AATTGAAAAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGCTTTTAAATATGAGTGGCT
          1 AATTGAAGAAGTGTCGTTGCCTTTCGACCCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT

                *                                                            
       2821 CAGCAGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
         66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA

                                         *     **                      
       2886 ATGGTCGAATTTCCAGAAATCCCAGAAAGTTTAATGGAATTAAACTTATCTGGCACTCA
        131 ATGGTCGAATTTCCAGAAATCCCAGAAAGCTTAATAAAATTAAACTTATCTGGCACTCA

                                    *   *                *                   
       2945 AATTGAAGAAGTGTCGTTGCCTTTTGACGCTCTATGTAATCTTCAACACTTAAATATGAGTGGCT
          1 AATTGAAGAAGTGTCGTTGCCTTTCGACCCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT

               *                              *     *   *   *                
       3010 CAGTGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCACT-ATCTGGATCTTAGTGGTTGCCC
         66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTC-GTAAACTGAATCTTAGTGGTTGCCC

              *         
       3074 AAAGGTCGAATT
        130 AATGGTCGAATT

       3086 ACTCTCAGAG


Statistics
Matches: 304,  Mismatches: 25, Indels: 2
        0.92            0.08        0.01

Matches are distributed among these distances:
 189  303  1.00
 190    1  0.00

ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Consensus pattern (189 bp):   
AATTGAAGAAGTGTCGTTGCCTTTCGACCCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
ATGGTCGAATTTCCAGAAATCCCAGAAAGCTTAATAAAATTAAACTTATCTGGCACTCA
Done.