Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00155.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5165
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:2624 original size:39 final size:39

Alignment explanation


    Indices: 2575--2654  Score: 133
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       2565 TCAAAATTGG

                 *                            *    
       2575 ATCCCTAGCTAAGGAATGGGCAGCGACATATGCTGGGAA
          1 ATCCCGAGCTAAGGAATGGGCAGCGACATATGCTAGGAA

                                         *         
       2614 ATCCCGAGCTAAGGAATGGGCAGCGACATCTGCTAGGAA
          1 ATCCCGAGCTAAGGAATGGGCAGCGACATATGCTAGGAA

              
       2653 AT
          1 AT

       2655 ACCGGCATGA


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.31, C:0.21, G:0.30, T:0.17


Consensus pattern (39 bp):   
ATCCCGAGCTAAGGAATGGGCAGCGACATATGCTAGGAA

Found at i:2999 original size:12 final size:12

Alignment explanation


    Indices: 2982--3006  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2972 AGGCATTACA

                        
       2982 TGGGTGATCACG
          1 TGGGTGATCACG

                        
       2994 TGGGTGATCACG
          1 TGGGTGATCACG

             
       3006 T
          1 T

       3007 CTTTATTCTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28


Consensus pattern (12 bp):   
TGGGTGATCACG
Done.