Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00159.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1919
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31


Found at i:39 original size:26 final size:26

Alignment explanation


    Indices: 3--56  Score: 99
    Period size: 26  Copynumber: 2.1  Consensus size: 26

          1 GG

                        *             
          3 CTTAAAGAAAATTAGGCCAAGAAAAT
          1 CTTAAAGAAAATCAGGCCAAGAAAAT

                                      
         29 CTTAAAGAAAATCAGGCCAAGAAAAT
          1 CTTAAAGAAAATCAGGCCAAGAAAAT

              
         55 CT
          1 CT

         57 ACCTTAGTAT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.52, C:0.15, G:0.15, T:0.19


Consensus pattern (26 bp):   
CTTAAAGAAAATCAGGCCAAGAAAAT
Done.