Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00160.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4616
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:1571 original size:81 final size:81

Alignment explanation


    Indices: 1436--1593  Score: 257
    Period size: 81  Copynumber: 2.0  Consensus size: 81

       1426 CATAGAAACA

                                                           *                 
       1436 ACAAAACATATTCTAAGTGGTTGTTATAAGGGTGTAGAGTGTGGAATCAACAAATTGGTTGACAA
          1 ACAAAACATATTCTAAGTGGTTGTTATAAGGGTGTAGAGTGTGGAATAAACAAATTGGTTGACAA

                 *          
       1501 ATGCCTGATCAAGAGG
         66 ATGCCAGATCAAGAGG

                                              *                              
       1517 ACAAAACATATTCTAAGTGGTTGTTATCAA-GGTTTAGAGTGT-GAAGTAAACAAATTGGTTGAC
          1 ACAAAACATATTCTAAGTGGTTGTTAT-AAGGGTGTAGAGTGTGGAA-TAAACAAATTGGTTGAC

                          
       1580 AAATGCCAGATCAA
         64 AAATGCCAGATCAA

       1594 TGTCTCATCT


Statistics
Matches: 72,  Mismatches: 3, Indels: 4
        0.91            0.04        0.05

Matches are distributed among these distances:
  80    3  0.04
  81   67  0.93
  82    2  0.03

ACGTcount: A:0.37, C:0.11, G:0.23, T:0.28


Consensus pattern (81 bp):   
ACAAAACATATTCTAAGTGGTTGTTATAAGGGTGTAGAGTGTGGAATAAACAAATTGGTTGACAA
ATGCCAGATCAAGAGG
Done.