Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00161.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3440
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34


Found at i:1925 original size:40 final size:40

Alignment explanation


    Indices: 1855--1931  Score: 109
    Period size: 40  Copynumber: 1.9  Consensus size: 40

       1845 AAGTCTGCTT

                             *    *  *              
       1855 ATGTGTGAGATTGCTTTTTGTTGTAGTCTGTGATTTTCTC
          1 ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTTCTC

                         *                  *    
       1895 ATGTGTGAGATTGGTTTGTGTTATAATCTGTGCTTTT
          1 ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTT

       1932 ATCTTGATCT


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  40   32  1.00

ACGTcount: A:0.14, C:0.08, G:0.26, T:0.52


Consensus pattern (40 bp):   
ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTTCTC

Found at i:2563 original size:15 final size:15

Alignment explanation


    Indices: 2545--2577  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       2535 ACACCAAAAA

                           
       2545 TGCACATATGTATAT
          1 TGCACATATGTATAT

                           
       2560 TGCACATATGTATAT
          1 TGCACATATGTATAT

               
       2575 TGC
          1 TGC

       2578 GCTTTACTTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39


Consensus pattern (15 bp):   
TGCACATATGTATAT
Done.