Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00164.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31


Found at i:74 original size:21 final size:23

Alignment explanation


    Indices: 43--101  Score: 109
    Period size: 23  Copynumber: 2.6  Consensus size: 23

         33 ATATTTCTCT

                                   
         43 CTTTCTCTCTCTAAAAATCTTCC
          1 CTTTCTCTCTCTAAAAATCTTCC

                                   
         66 CTTTCTCTCTCTAAAAATCTTCC
          1 CTTTCTCTCTCTAAAAATCTTCC

            *            
         89 TTTTCTCTCTCTA
          1 CTTTCTCTCTCTA

        102 GAATCGCTTT


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  23   35  1.00

ACGTcount: A:0.19, C:0.34, G:0.00, T:0.47


Consensus pattern (23 bp):   
CTTTCTCTCTCTAAAAATCTTCC
Done.