Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00169.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2052
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29


Found at i:1945 original size:2 final size:2

Alignment explanation


    Indices: 1938--1976  Score: 60
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       1928 GGTGGGGTGG

                           *  *                                       
       1938 AT AT AT AT AT TT TT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1977 GTTTGAGTGT


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (2 bp):   
AT

Done.