Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00178.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 474

Length: 790
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40


Found at i:163 original size:14 final size:14

Alignment explanation


    Indices: 140--169  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        130 AGCTTCAAAC

                          
        140 ATATACACATATAT
          1 ATATACACATATAT

                 *        
        154 ATATATACATATAT
          1 ATATACACATATAT

              
        168 AT
          1 AT

        170 GATAGCTTCT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40


Consensus pattern (14 bp):   
ATATACACATATAT
Done.