Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00179.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 908

Length: 1514
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27


Found at i:1392 original size:2 final size:2

Alignment explanation


    Indices: 1385--1418  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       1375 GAGTTGTTTT

                                                                
       1385 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1419 TTGATCTCTT


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   30  0.97

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Done.