Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00193.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2207
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33


Found at i:762 original size:14 final size:15

Alignment explanation


    Indices: 737--778  Score: 50
    Period size: 15  Copynumber: 2.8  Consensus size: 15

        727 TTGTTGATTC

                *          
        737 ATTTCGAATTTGGAT
          1 ATTTTGAATTTGGAT

                          * 
        752 ATTTT-AATTTGGGTT
          1 ATTTTGAATTT-GGAT

                        
        767 ATTTTGAATTTG
          1 ATTTTGAATTTG

        779 AGTGATTTAG


Statistics
Matches: 23,  Mismatches: 2, Indels: 4
        0.79            0.07        0.14

Matches are distributed among these distances:
  14    5  0.22
  15   13  0.57
  16    5  0.22

ACGTcount: A:0.24, C:0.02, G:0.19, T:0.55


Consensus pattern (15 bp):   
ATTTTGAATTTGGAT

Found at i:778 original size:16 final size:16

Alignment explanation


    Indices: 737--794  Score: 57
    Period size: 16  Copynumber: 3.8  Consensus size: 16

        727 TTGTTGATTC

                *         * 
        737 ATTTCGAATTT-GGAT
          1 ATTTTGAATTTGGGTT

                            
        752 ATTTT-AATTTGGGTT
          1 ATTTTGAATTTGGGTT

                        *  *
        767 ATTTTGAATTTGAGTG
          1 ATTTTGAATTTGGGTT

                *       
        783 ATTTAGAATTTG
          1 ATTTTGAATTTG

        795 AGTCATTCGG


Statistics
Matches: 36,  Mismatches: 5, Indels: 3
        0.82            0.11        0.07

Matches are distributed among these distances:
  14    5  0.14
  15   12  0.33
  16   19  0.53

ACGTcount: A:0.26, C:0.02, G:0.21, T:0.52


Consensus pattern (16 bp):   
ATTTTGAATTTGGGTT

Done.