Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00203.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1187
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:1069 original size:25 final size:25

Alignment explanation


    Indices: 1022--1085  Score: 112
    Period size: 25  Copynumber: 2.6  Consensus size: 25

       1012 GATGATAATT

                                     
       1022 TTAATTTAATATA-TTTAATTGTAA
          1 TTAATTTAATATATTTTAATTGTAA

                                     
       1046 TTAATTTAATATATTTTAATTGTAA
          1 TTAATTTAATATATTTTAATTGTAA

               *           
       1071 TTAGTTTAATATATT
          1 TTAATTTAATATATT

       1086 GAAAAACCCA


Statistics
Matches: 38,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
  24   13  0.34
  25   25  0.66

ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56


Consensus pattern (25 bp):   
TTAATTTAATATATTTTAATTGTAA
Done.