Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00209.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 516

Length: 860
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30


Found at i:477 original size:28 final size:26

Alignment explanation


    Indices: 435--509  Score: 87
    Period size: 26  Copynumber: 2.8  Consensus size: 26

        425 AAAAGTAGCT

                    * *               * 
        435 AAATTACTATAATACCCCTATGTATGGA
          1 AAATTACTGTTATACCCCTA-G-ATGCA

                                 *    
        463 AAATTACTGTTATACCCCTAGGTGCA
          1 AAATTACTGTTATACCCCTAGATGCA

                   *             
        489 AAATTACCGTTATACCCCTAG
          1 AAATTACTGTTATACCCCTAG

        510 GGTTAATTTT


Statistics
Matches: 42,  Mismatches: 5, Indels: 2
        0.86            0.10        0.04

Matches are distributed among these distances:
  26   23  0.55
  27    1  0.02
  28   18  0.43

ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31


Consensus pattern (26 bp):   
AAATTACTGTTATACCCCTAGATGCA

Found at i:690 original size:27 final size:27

Alignment explanation


    Indices: 613--777  Score: 201
    Period size: 27  Copynumber: 6.2  Consensus size: 27

        603 GAGGAAGCGT

                      *                
        613 TCTGGTGGCTATGCCACAAATATCT-A
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                                       
        639 TCTGGTGGCTCTG-CACAAATATCTGA
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                                       
        665 TCTGGTGGCTCTGCCACAAATATCTGA
          1 TCTGGTGGCTCTGCCACAAATATCTGA

             *    *           *       *
        692 TTTGGTAGCTCTGCCACATATATCTGT
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                             * *        
        719 TCTGGTGGCTCTGCCACGATTATCTGTA
          1 TCTGGTGGCTCTGCCACAAATATCTG-A

                   *     *     *      *
        747 TCTGGTGACTCTGTCAC-ATTATCTGT
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                 
        773 TCTGG
          1 TCTGG

        778 CAGCCATGCT


Statistics
Matches: 122,  Mismatches: 14, Indels: 6
        0.86            0.10        0.04

Matches are distributed among these distances:
  25   11  0.09
  26   31  0.25
  27   65  0.53
  28   15  0.12

ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35


Consensus pattern (27 bp):   
TCTGGTGGCTCTGCCACAAATATCTGA

Done.