Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00221.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2303
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:2206 original size:18 final size:18

Alignment explanation


    Indices: 2181--2273  Score: 132
    Period size: 18  Copynumber: 5.2  Consensus size: 18

       2171 ACCGTTTACG

                              
       2181 GTACTATTCACGTATACA
          1 GTACTATTCACGTATACA

             *                
       2199 GCACTATTCACGTATACA
          1 GTACTATTCACGTATACA

                             *
       2217 GTACTATTCACGTATACG
          1 GTACTATTCACGTATACA

                    *   *    *
       2235 GTACTATTTACGAATACG
          1 GTACTATTCACGTATACA

                 *            
       2253 GTACTGTTCACGTATACA
          1 GTACTATTCACGTATACA

               
       2271 GTA
          1 GTA

       2274 GTTGGGATTG


Statistics
Matches: 66,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   66  1.00

ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32


Consensus pattern (18 bp):   
GTACTATTCACGTATACA

Done.