Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00227.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3301
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:2919 original size:15 final size:15

Alignment explanation


    Indices: 2899--2930  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2889 TTTATTTCTA

                           
       2899 TAAAATAATAATCTT
          1 TAAAATAATAATCTT

                           
       2914 TAAAATAATAATCTT
          1 TAAAATAATAATCTT

              
       2929 TA
          1 TA

       2931 CATTCTTTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41


Consensus pattern (15 bp):   
TAAAATAATAATCTT

Found at i:3228 original size:27 final size:27

Alignment explanation


    Indices: 3188--3239  Score: 95
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       3178 TCAGTACTGG

                     *                 
       3188 AATGCACTTTACCGAGATATCTAATGA
          1 AATGCACTTCACCGAGATATCTAATGA

                                     
       3215 AATGCACTTCACCGAGATATCTAAT
          1 AATGCACTTCACCGAGATATCTAAT

       3240 TTCATTAAGT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29


Consensus pattern (27 bp):   
AATGCACTTCACCGAGATATCTAATGA
Done.