Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00227.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3927
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:846 original size:3 final size:3

Alignment explanation


    Indices: 832--876  Score: 63
    Period size: 3  Copynumber: 15.0  Consensus size: 3

        822 CCATTTTTTC

                     *                       *            *            
        832 TCT TCT TAT TCT TCT TCT TCT TCT TTT TCT TCT TCA TCT TCT TCT
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

        877 CTTATTATTT


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.04, C:0.29, G:0.00, T:0.67


Consensus pattern (3 bp):   
TCT

Found at i:1104 original size:3 final size:3

Alignment explanation


    Indices: 1096--1125  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

       1086 TAATTTACAC

                                                   
       1096 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

       1126 GTTCAGCAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
TAA

Done.