Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00233.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3710
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:3242 original size:28 final size:27

Alignment explanation


    Indices: 3203--3257  Score: 76
    Period size: 28  Copynumber: 2.0  Consensus size: 27

       3193 TTTGGATTAG

                                 *      
       3203 TGTTCATTAAATA-AAAAATATATATTT
          1 TGTTCATTAAATATAAAAA-AAATATTT

                                        
       3230 TGTTCAATTAAATATAAAAAAAATATTT
          1 TGTTC-ATTAAATATAAAAAAAATATTT

       3258 CATTATTATT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  27    5  0.20
  28   15  0.60
  29    5  0.20

ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42


Consensus pattern (27 bp):   
TGTTCATTAAATATAAAAAAAATATTT
Done.