Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00247.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4270
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33


Found at i:2588 original size:16 final size:17

Alignment explanation


    Indices: 2556--2589  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2546 AAAGTGAGTC

                  *          
       2556 AAACTTTGAATTGACTT
          1 AAACTTAGAATTGACTT

                             
       2573 AAACTTAGAA-TGACTT
          1 AAACTTAGAATTGACTT

             
       2589 A
          1 A

       2590 GATCAAAACC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    7  0.44
  17    9  0.56

ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35


Consensus pattern (17 bp):   
AAACTTAGAATTGACTT
Done.