Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00255.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2186
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:778 original size:12 final size:12

Alignment explanation


    Indices: 761--799  Score: 53
    Period size: 12  Copynumber: 3.3  Consensus size: 12

        751 CCGTATACTG

                        
        761 TCAAGCTTGAGC
          1 TCAAGCTTGAGC

                   *    
        773 TCAAGCTCGAGC
          1 TCAAGCTTGAGC

              *         
        785 TCGAGCTTGA-C
          1 TCAAGCTTGAGC

                
        796 TCAA
          1 TCAA

        800 AATTCAGAAT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  11    4  0.17
  12   19  0.83

ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23


Consensus pattern (12 bp):   
TCAAGCTTGAGC
Done.