Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00259.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2252
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:2034 original size:28 final size:28

Alignment explanation


    Indices: 2002--2057  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1992 GAAATGGCAG

                                        
       2002 ATAGCCATTGAAGAGCAAGACAGAGTTC
          1 ATAGCCATTGAAGAGCAAGACAGAGTTC

                                        
       2030 ATAGCCATTGAAGAGCAAGACAGAGTTC
          1 ATAGCCATTGAAGAGCAAGACAGAGTTC

       2058 TTTGCCTTTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18


Consensus pattern (28 bp):   
ATAGCCATTGAAGAGCAAGACAGAGTTC
Done.