Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00271.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 433

Length: 723
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.44


Found at i:189 original size:12 final size:12

Alignment explanation


    Indices: 168--201  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        158 GATGATATGA

                 *      
        168 TGATGATGATGG
          1 TGATGTTGATGG

                       *
        180 TGATGTTGATGT
          1 TGATGTTGATGG

                      
        192 TGATGTTGAT
          1 TGATGTTGAT

        202 AATGGTACAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44


Consensus pattern (12 bp):   
TGATGTTGATGG
Done.