Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g00275.P2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4469
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Found at i:2599 original size:34 final size:34
Alignment explanation
Indices: 2556--2626 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
2546 CCCCTTAGAA
2556 GGTTACATAAATAAGAAACCAGAGGCTGCTTACT
1 GGTTACATAAATAAGAAACCAGAGGCTGCTTACT
*
2590 GGTTACATAAATAAGAAACCAGGGGCTGCTTACT
1 GGTTACATAAATAAGAAACCAGAGGCTGCTTACT
2624 GGT
1 GGT
2627 ATTTATCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (34 bp):
GGTTACATAAATAAGAAACCAGAGGCTGCTTACT
Found at i:3292 original size:325 final size:325
Alignment explanation
Indices: 2696--3349 Score: 1263
Period size: 325 Copynumber: 2.0 Consensus size: 325
2686 AGCCGGTGGT
*
2696 AAGATGTATTAGATCGAAGCTAGCGGTTTAGGTGAATGTTAAGTAGGTCCGACCTTCTTGAGTTT
1 AAGATGTATTAGATCGAAGCTAGCGGTTTAGGTGAATGTTAAGTAGGTCCGACCGTCTTGAGTTT
2761 CTTGTTGTATTGGCCAGACGAGGTAATGTTAAGTAGGTCTGACCATCTGAGTTTCAAATCCCGAC
66 CTTGTTGTATTGGCCAGACGAGGTAATGTTAAGTAGGTCTGACCATCTGAGTTTCAAATCCCGAC
*
2826 ATCATTATCCTCTTATTCTCATATTCAAATGCAATGAAGTTCATTAATGTATTTTCTTTTAAAGC
131 ATCATTATCCTCTTATTCTCATATTCAAATGCAATGAAGTTCATTAATATATTTTCTTTTAAAGC
2891 TATAAGTACTTACAAATATCAAAAAAATGAAAAAACAAATAAAAATCTCCGTTGTTGCTTTCTGC
196 TATAAGTACTTACAAATATCAAAAAAATGAAAAAACAAATAAAAATCTCCGTTGTTGCTTTCTGC
*
2956 AGAAGTGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTA
261 AGAAATGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTA
3021 AAGATGTATTAGATCGAAGCTAGCGGTTTAGGTGAATGTTAAGTAGGTCCGACCGTCTTGAGTTT
1 AAGATGTATTAGATCGAAGCTAGCGGTTTAGGTGAATGTTAAGTAGGTCCGACCGTCTTGAGTTT
* *
3086 CTTGTTGTATTGGCCATACGAGGTAATGTTAAGTAGGTCTGACCATCTGAGTTTCAAATCCTGAC
66 CTTGTTGTATTGGCCAGACGAGGTAATGTTAAGTAGGTCTGACCATCTGAGTTTCAAATCCCGAC
3151 ATCATTATCCTCTTATTCTCATATTCAAATGCAATGAAGTTCATTAATATATTTTCTTTTAAAGC
131 ATCATTATCCTCTTATTCTCATATTCAAATGCAATGAAGTTCATTAATATATTTTCTTTTAAAGC
3216 TATAAGTACTTACAAATATCAAAAAAATGAAAAAACAAATAAAAATCTCCGTTGTTGCTTTCTGC
196 TATAAGTACTTACAAATATCAAAAAAATGAAAAAACAAATAAAAATCTCCGTTGTTGCTTTCTGC
3281 AGAAATGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTA
261 AGAAATGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTA
3346 AAGA
1 AAGA
3350 CCAGAGTCCC
Statistics
Matches: 324, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
325 324 1.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Consensus pattern (325 bp):
AAGATGTATTAGATCGAAGCTAGCGGTTTAGGTGAATGTTAAGTAGGTCCGACCGTCTTGAGTTT
CTTGTTGTATTGGCCAGACGAGGTAATGTTAAGTAGGTCTGACCATCTGAGTTTCAAATCCCGAC
ATCATTATCCTCTTATTCTCATATTCAAATGCAATGAAGTTCATTAATATATTTTCTTTTAAAGC
TATAAGTACTTACAAATATCAAAAAAATGAAAAAACAAATAAAAATCTCCGTTGTTGCTTTCTGC
AGAAATGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTA
Done.