Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00275.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2954
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30


Found at i:2668 original size:34 final size:34

Alignment explanation


    Indices: 2625--2695  Score: 133
    Period size: 34  Copynumber: 2.1  Consensus size: 34

       2615 ATGGAGACAA

                                              
       2625 GGTTACATAAATAAGAAACCAGAGGCTGCTTACT
          1 GGTTACATAAATAAGAAACCAGAGGCTGCTTACT

                                  *           
       2659 GGTTACATAAATAAGAAACCAGGGGCTGCTTACT
          1 GGTTACATAAATAAGAAACCAGAGGCTGCTTACT

               
       2693 GGT
          1 GGT

       2696 ATTTATCGAA


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   36  1.00

ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24


Consensus pattern (34 bp):   
GGTTACATAAATAAGAAACCAGAGGCTGCTTACT
Done.