Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00282.M4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8170
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:4248 original size:19 final size:18

Alignment explanation


    Indices: 4209--4248  Score: 55
    Period size: 19  Copynumber: 2.2  Consensus size: 18

       4199 TATTTATTTT

                              
       4209 TTTAAATTTTTTTTCACA
          1 TTTAAATTTTTTTTCACA

                                
       4227 TTTATAATTATTTTTTCA-A
          1 TTTA-AATT-TTTTTTCACA

               
       4246 TTT
          1 TTT

       4249 TTAAAAGCAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  18    4  0.20
  19    8  0.40
  20    8  0.40

ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65


Consensus pattern (18 bp):   
TTTAAATTTTTTTTCACA
Done.