Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00285.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8120
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Found at i:7749 original size:90 final size:90

Alignment explanation


    Indices: 7596--7784  Score: 378
    Period size: 90  Copynumber: 2.1  Consensus size: 90

       7586 GAGAGAGAAT

                                                                             
       7596 AATGCCTTAAGTAGAGAATGACAATTATGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTAT
          1 AATGCCTTAAGTAGAGAATGACAATTATGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTAT

                                     
       7661 AGTTGAGATTCAAGGATCAACTTGC
         66 AGTTGAGATTCAAGGATCAACTTGC

                                                                             
       7686 AATGCCTTAAGTAGAGAATGACAATTATGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTAT
          1 AATGCCTTAAGTAGAGAATGACAATTATGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTAT

                                     
       7751 AGTTGAGATTCAAGGATCAACTTGC
         66 AGTTGAGATTCAAGGATCAACTTGC

                     
       7776 AATGCCTTA
          1 AATGCCTTA

       7785 TACAATTAGG


Statistics
Matches: 99,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  90   99  1.00

ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28


Consensus pattern (90 bp):   
AATGCCTTAAGTAGAGAATGACAATTATGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTAT
AGTTGAGATTCAAGGATCAACTTGC
Done.