Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00286.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5714
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32


Found at i:1041 original size:14 final size:14

Alignment explanation


    Indices: 1019--1052  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1009 ACAATATCTT

                *         
       1019 AATAATAGTAATAA
          1 AATAGTAGTAATAA

                         *
       1033 AATAGTAGTAATAT
          1 AATAGTAGTAATAA

                  
       1047 AATAGT
          1 AATAGT

       1053 GAAACAGTAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32


Consensus pattern (14 bp):   
AATAGTAGTAATAA
Done.