Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00293.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28


Found at i:850 original size:21 final size:21

Alignment explanation


    Indices: 824--870  Score: 69
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        814 ATGGAGGCGA

                  *               
        824 TCTCCATGTAGATCA-TCAAGG
          1 TCTCCAGGTAGAT-ATTCAAGG

                                 
        845 TCTCCAGGTAGATATTCAAGG
          1 TCTCCAGGTAGATATTCAAGG

                 
        866 TCTCC
          1 TCTCC

        871 TTCTGGGTCT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  20    1  0.04
  21   23  0.96

ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30


Consensus pattern (21 bp):   
TCTCCAGGTAGATATTCAAGG
Done.