Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00293.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1463
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:1168 original size:21 final size:21

Alignment explanation


    Indices: 1142--1188  Score: 69
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1132 ATGGAGGCGA

                  *               
       1142 TCTCCATGTAGATCA-TCAAGG
          1 TCTCCAGGTAGAT-ATTCAAGG

                                 
       1163 TCTCCAGGTAGATATTCAAGG
          1 TCTCCAGGTAGATATTCAAGG

                 
       1184 TCTCC
          1 TCTCC

       1189 TTCTGGGTCT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  20    1  0.04
  21   23  0.96

ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30


Consensus pattern (21 bp):   
TCTCCAGGTAGATATTCAAGG
Done.