Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00311.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2659
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37


Found at i:631 original size:19 final size:20

Alignment explanation


    Indices: 594--632  Score: 53
    Period size: 19  Copynumber: 2.0  Consensus size: 20

        584 AAGTTAATAA

                          *     
        594 AAATTTTAATTAAGGTGGAT
          1 AAATTTTAATTAAGATGGAT

                        *       
        614 AAATTTT-ATTACGATGGAT
          1 AAATTTTAATTAAGATGGAT

        633 GACAGTGGTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  19   10  0.59
  20    7  0.41

ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41


Consensus pattern (20 bp):   
AAATTTTAATTAAGATGGAT
Done.