Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00344.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:244 original size:16 final size:16

Alignment explanation


    Indices: 223--253  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        213 CAAGATCACT

                            
        223 TATCTGCAGTCTGTTA
          1 TATCTGCAGTCTGTTA

                           
        239 TATCTGCAGTCTGTT
          1 TATCTGCAGTCTGTT

        254 TTTCCCAGCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45


Consensus pattern (16 bp):   
TATCTGCAGTCTGTTA
Done.