Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00352.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 363

Length: 606
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24


Found at i:472 original size:39 final size:39

Alignment explanation


    Indices: 422--570  Score: 235
    Period size: 39  Copynumber: 3.8  Consensus size: 39

        412 AAGGACTCCG

                                           *      *
        422 GACCAAGCCCTGGAACGGGAAATAAGTTTACTGAATCCG
          1 GACCAAGCCCTGGAACGGGAAATAAGTTTACCGAATCCA

                                                   
        461 GACCAAGCCCTGGAACGGGAAATAAGTTTACCGAATCCA
          1 GACCAAGCCCTGGAACGGGAAATAAGTTTACCGAATCCA

                         *  *                 *    
        500 GACCAAGCCCTGGGACAGGAAATAAGTTTACCGACTCCA
          1 GACCAAGCCCTGGAACGGGAAATAAGTTTACCGAATCCA

             *                      *       
        539 GTCCAAGCCCTGGAACGGGAAATAGGTTTACC
          1 GACCAAGCCCTGGAACGGGAAATAAGTTTACC

        571 AACTCCGGCT


Statistics
Matches: 101,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  39  101  1.00

ACGTcount: A:0.33, C:0.26, G:0.25, T:0.17


Consensus pattern (39 bp):   
GACCAAGCCCTGGAACGGGAAATAAGTTTACCGAATCCA

Found at i:587 original size:39 final size:37

Alignment explanation


    Indices: 418--590  Score: 193
    Period size: 39  Copynumber: 4.4  Consensus size: 37

        408 CATCAAGGAC

                                                *  
        418 TCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACTGAA
          1 TCCGG-CCAAGCCCTGGAACGGGAAATAAGTTTAC-CAA

                                                   
        457 TCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACCGAA
          1 TCCGG-CCAAGCCCTGGAACGGGAAATAAGTTTACC-AA

                 *           *  *                 *
        496 TCCAGACCAAGCCCTGGGACAGGAAATAAGTTTACCGAC
          1 TCC-GGCCAAGCCCTGGAACGGGAAATAAGTTTACC-AA

                 *                      *         
        535 TCCAGTCCAAGCCCTGGAACGGGAAATAGGTTTACCAA
          1 TCC-GGCCAAGCCCTGGAACGGGAAATAAGTTTACCAA

                     *        
        573 CTCCGGCTCGAGCCCTGG
          1 -TCCGGC-CAAGCCCTGG

        591 TGTGGGAAAC


Statistics
Matches: 118,  Mismatches: 12, Indels: 8
        0.86            0.09        0.06

Matches are distributed among these distances:
  38    3  0.03
  39  114  0.97
  40    1  0.01

ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17


Consensus pattern (37 bp):   
TCCGGCCAAGCCCTGGAACGGGAAATAAGTTTACCAA

Done.