Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00358.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2425
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:1883 original size:127 final size:127

Alignment explanation


    Indices: 1594--1888  Score: 358
    Period size: 127  Copynumber: 2.3  Consensus size: 127

       1584 GCAATGCTTG

                                     *          *                    * *     
       1594 ATGTTTGGAAATTCGAGGAATCGTGTCCTATCGTGCCGGGTTTCAATTTCCCGTTTGTTTAAAAT
          1 ATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCAATTTCCCGTTTGCTCAAAAT

                                          *                               
       1659 AATCAAATATTCCTTTAGAATTTCACTCATGTCTTCAAAATGCTAAGACAAGGCAATATTCA
         66 AATCAAATATTCCTTTAGAATTTCACTCATATCTTCAAAATGCTAAGACAAGGCAATATTCA

             * *         * *            *               *      *             
       1721 ACGCTTGGAAATTTGGGGAATCGTGCCCAATCGTGCTGGGTTTCGATTTCCGGTTTGCTCAAAAT
          1 ATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCAATTTCCCGTTTGCTCAAAAT

             * ***                   *      *   *             *            
       1786 AGTTGGATATTCCTTTAGAATTTCATTCATATTTTCTAAATGCT-AGAGCGAGGCAATATTCA
         66 AATCAAATATTCCTTTAGAATTTCACTCATATCTTCAAAATGCTAAGA-CAAGGCAATATTCA

                   *        *   *         *          
       1848 ATGTTTGAAAATTCGATGAAACGTGCCCTACCGTGCTGGGT
          1 ATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGT

       1889 GTCGGTTTTT


Statistics
Matches: 138,  Mismatches: 29, Indels: 2
        0.82            0.17        0.01

Matches are distributed among these distances:
 126    3  0.02
 127  135  0.98

ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Consensus pattern (127 bp):   
ATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCAATTTCCCGTTTGCTCAAAAT
AATCAAATATTCCTTTAGAATTTCACTCATATCTTCAAAATGCTAAGACAAGGCAATATTCA
Done.