Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00359.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4013
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:600 original size:28 final size:29

Alignment explanation


    Indices: 568--623  Score: 69
    Period size: 28  Copynumber: 2.0  Consensus size: 29

        558 TTATTATTCC

                 *          *            
        568 GAATATAAAAATAGATGA-TAATAAAAAT
          1 GAATAGAAAAATAGATAATTAATAAAAAT

                    *     *             
        596 GAATAGAATAATAGTTAATTAATAAAAA
          1 GAATAGAAAAATAGATAATTAATAAAAA

        624 AATAACATTA


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  28   14  0.61
  29    9  0.39

ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27


Consensus pattern (29 bp):   
GAATAGAAAAATAGATAATTAATAAAAAT
Done.