Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00363.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1255
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36


Found at i:477 original size:3 final size:3

Alignment explanation


    Indices: 459--518  Score: 59
    Period size: 3  Copynumber: 20.3  Consensus size: 3

        449 TCAAGCCCTT

                      *   *                         **          *     *    
        459 TGA TGA TGG TGT TGA TGA TGA TGA TGA TGA ACA TGA TGA GGA TGG TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

                             
        507 TGA TGA TG- TGA T
          1 TGA TGA TGA TGA T

        519 AGGTCCAAGA


Statistics
Matches: 45,  Mismatches: 11, Indels: 2
        0.78            0.19        0.03

Matches are distributed among these distances:
   2    2  0.04
   3   43  0.96

ACGTcount: A:0.28, C:0.02, G:0.37, T:0.33


Consensus pattern (3 bp):   
TGA

Done.