Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00372.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5342
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:4662 original size:29 final size:28

Alignment explanation


    Indices: 4582--4668  Score: 75
    Period size: 29  Copynumber: 3.0  Consensus size: 28

       4572 AGTCAAATCA

                         *    *          
       4582 TTCAAAATGGTCATATAAGGGCCAAACCT
          1 TTCAAAATGGTCAAATAAAGGCCAAA-CT

                  * *  *      *           
       4611 TTACTACAGTGATCAAATGAAGGCCAAACT
          1 TT-C-AAAATGGTCAAATAAAGGCCAAACT

                                  *     
       4641 TATCAAAATGGTCAAATAAAGGTCAAAC
          1 T-TCAAAATGGTCAAATAAAGGCCAAAC

       4669 ATCATGTTTA


Statistics
Matches: 44,  Mismatches: 11, Indels: 6
        0.72            0.18        0.10

Matches are distributed among these distances:
  29   21  0.48
  30    5  0.11
  31   18  0.41

ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23


Consensus pattern (28 bp):   
TTCAAAATGGTCAAATAAAGGCCAAACT
Done.