Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00386.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 553

Length: 923
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:820 original size:2 final size:2

Alignment explanation


    Indices: 807--844  Score: 62
    Period size: 2  Copynumber: 20.0  Consensus size: 2

        797 AAGCAGCAGC

                                                                       
        807 AT AT AT -T A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        845 GCTTGCTTAC


Statistics
Matches: 34,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   1    2  0.06
   2   32  0.94

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.