Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02402.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4633
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:3103 original size:210 final size:209

Alignment explanation


    Indices: 2736--3547  Score: 1313
    Period size: 210  Copynumber: 3.9  Consensus size: 209

       2726 ACAATGTTAT

                           *               *                                 
       2736 TCTCTTGAAAAGCTTAGCATTTTCC-GTTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTA
          1 TCTCTTGAAAAGCTTCGCA-TTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTA

                                                                             
       2800 CCTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTG
         65 CCTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTG

                  *                                   *       *           *  
       2865 GAAGGACTTTCCTCTCTTCAATATCTGTCAGTTCGAGTGTGCTACAAATTTGAAGTTCTTCCTAT
        130 GAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGAGT-TGCAACAAATTGGAAGTTCTTCCAAT

               *     *      
       2930 AACCGGAGGGTGTTCA
        194 AACTGGAGGATGTTCA

                                                                             
       2946 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
          1 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC

                                    **    *                                  
       3011 CTCCACTTGTCTCAAAGAATTAGATTTAGACGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
         66 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG

                                *            *                         *     
       3076 AAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCTACGTTGCAACAAATTGGAAGTTCTTACAATA
        131 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGA-GTTGCAACAAATTGGAAGTTCTTCCAATA

                           
       3141 ACTGGAGGATGTTCA
        195 ACTGGAGGATGTTCA

                   *  *     *                                                
       3156 TCTCTTGTAATGCTTCTCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
          1 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC

                                    *   *                                    
       3221 CTCCACTTGTCTCAAAGAATTAGATCTAAAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
         66 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG

                                 *      *                                    
       3286 AAGGATTTTCCTCTCTTCAATTTCTGTCTGTT-GAAAGTTGCAACAAATTGGAAGTTCTTCCAAT
        131 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCG--AGTTGCAACAAATTGGAAGTTCTTCCAAT

                            
       3350 AACTGGAGGATGTTCA
        194 AACTGGAGGATGTTCA

                     **                   *                                  
       3366 TCTCTTGAAGGGCTTCGCATTTCCAGTTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
          1 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC

                                                                             
       3431 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
         66 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG

                                             *       *    *     
       3496 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAATGTTGCGACAAGTTGGA
        131 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGA-GTTGCAACAAATTGGA

       3548 GAGCTTTCCA


Statistics
Matches: 559,  Mismatches: 37, Indels: 12
        0.92            0.06        0.02

Matches are distributed among these distances:
 209    6  0.01
 210  550  0.98
 211    3  0.01

ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34


Consensus pattern (209 bp):   
TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGAGTTGCAACAAATTGGAAGTTCTTCCAATAA
CTGGAGGATGTTCA

Done.