Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00413.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3725
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39


Found at i:1326 original size:24 final size:26

Alignment explanation


    Indices: 1299--1358  Score: 65
    Period size: 24  Copynumber: 2.4  Consensus size: 26

       1289 TTGTTTTTTA

                                      
       1299 TTTTTTAATAA-CCTTATTTT--GTT
          1 TTTTTTAATAATCCTTATTTTGAGTT

                          *             
       1322 TTTTTATAA-AATCGTTATTTTGAAGTT
          1 TTTTT-TAATAATCCTTATTTTG-AGTT

                      
       1349 TTTTTTAATA
          1 TTTTTTAATA

       1359 TCATTTTATT


Statistics
Matches: 30,  Mismatches: 1, Indels: 8
        0.77            0.03        0.21

Matches are distributed among these distances:
  23    7  0.23
  24   11  0.37
  26    3  0.10
  27    9  0.30

ACGTcount: A:0.27, C:0.05, G:0.07, T:0.62


Consensus pattern (26 bp):   
TTTTTTAATAATCCTTATTTTGAGTT
Done.