Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00416.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 454

Length: 757
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34


Found at i:37 original size:26 final size:24

Alignment explanation


    Indices: 1--149  Score: 217
    Period size: 26  Copynumber: 5.8  Consensus size: 24

                                      
          1 TAGGTAAATGTTCCATGATAATAGGT
          1 TAGGTAAATGTT-CATGATAAT-GGT

                                      
         27 TAGGTAAATGTTCCATGATAATGGGT
          1 TAGGTAAATGTT-CATGATAAT-GGT

                                      
         53 TAGGTAAATGCTTCATGATAATAGGT
          1 TAGGTAAATG-TTCATGATAAT-GGT

                                      
         79 TAGGTAAATGTTCCATGATAATGAGT
          1 TAGGTAAATGTT-CATGATAATG-GT

                                     
        105 TAGGTAAATGTTCATGATAATGAGT
          1 TAGGTAAATGTTCATGATAATG-GT

                                
        130 TAGGTAAATGTTCATGATAA
          1 TAGGTAAATGTTCATGATAA

        150 GAATTTCATG


Statistics
Matches: 118,  Mismatches: 2, Indels: 7
        0.93            0.02        0.06

Matches are distributed among these distances:
  25   36  0.31
  26   80  0.68
  27    2  0.02

ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35


Consensus pattern (24 bp):   
TAGGTAAATGTTCATGATAATGGT

Found at i:79 original size:52 final size:51

Alignment explanation


    Indices: 1--149  Score: 248
    Period size: 52  Copynumber: 2.9  Consensus size: 51

                                                             *  
          1 TAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGT
          1 TAGGTAAATGTT-CATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGT

                                                                
         53 TAGGTAAATGCTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGT
          1 TAGGTAAATG-TTCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGT

                                                           
        105 TAGGTAAATGTTCATGATAAT-GAGTTAGGTAAATGTT-CATGATAA
          1 TAGGTAAATGTTCATGATAATAG-GTTAGGTAAATGTTCCATGATAA

        150 GAATTTCATG


Statistics
Matches: 94,  Mismatches: 1, Indels: 6
        0.93            0.01        0.06

Matches are distributed among these distances:
  50    9  0.10
  51   25  0.27
  52   58  0.62
  53    2  0.02

ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35


Consensus pattern (51 bp):   
TAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGT
Done.