Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00423.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 443

Length: 739
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.35


Found at i:696 original size:17 final size:19

Alignment explanation


    Indices: 661--697  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        651 TTTAATTAGC

                               
        661 ATTATGAGATAAAATTATT
          1 ATTATGAGATAAAATTATT

                 *             
        680 ATTATTAGA-AAAA-TATT
          1 ATTATGAGATAAAATTATT

             
        697 A
          1 A

        698 CTGTAAGTAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  17    5  0.29
  18    4  0.24
  19    8  0.47

ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41


Consensus pattern (19 bp):   
ATTATGAGATAAAATTATT
Done.