Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00428.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1277
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33


Found at i:1263 original size:19 final size:19

Alignment explanation


    Indices: 1218--1265  Score: 55
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       1208 TTTCTTTTTG

                            *  
       1218 TATAT-TATATCATATCTA
          1 TATATATATATCATATATA

               *                
       1236 -ATCTCATATATCATATATA
          1 TATAT-ATATATCATATATA

                       
       1255 TATATATATAT
          1 TATATATATAT

       1266 GATAAATGCT


Statistics
Matches: 24,  Mismatches: 3, Indels: 5
        0.75            0.09        0.16

Matches are distributed among these distances:
  17    3  0.12
  19   18  0.75
  20    3  0.12

ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48


Consensus pattern (19 bp):   
TATATATATATCATATATA
Done.