Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00430.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Found at i:388 original size:18 final size:19

Alignment explanation


    Indices: 361--396  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

        351 AAAAAAAAGA

                               
        361 AAATACAAAAGAAAAAAAT
          1 AAATACAAAAGAAAAAAAT

                      *       
        380 AAATA-AAAATAAAAAAA
          1 AAATACAAAAGAAAAAAA

        397 ATCAAAAGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   11  0.69
  19    5  0.31

ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11


Consensus pattern (19 bp):   
AAATACAAAAGAAAAAAAT
Done.