Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00433.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 945

Length: 1576
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32


Found at i:938 original size:15 final size:15

Alignment explanation


    Indices: 914--945  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        904 ACAACACCTC

                           
        914 ACCAGAGAAATCAGT
          1 ACCAGAGAAATCAGT

                 *         
        929 ACCAGGGAAATCAGT
          1 ACCAGAGAAATCAGT

              
        944 AC
          1 AC

        946 TTGATCTAAC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12


Consensus pattern (15 bp):   
ACCAGAGAAATCAGT
Done.