Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00441.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1243
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33


Found at i:238 original size:26 final size:26

Alignment explanation


    Indices: 199--308  Score: 184
    Period size: 26  Copynumber: 4.2  Consensus size: 26

        189 TGATACAAAT

                     *                
        199 TGATAATAGATTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                   *  
        225 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        251 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        277 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
        303 TGATAA
          1 TGATAA

        309 GAATATCATG


Statistics
Matches: 80,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  26   80  1.00

ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA

Done.