Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00444.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 288

Length: 480
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29


Found at i:213 original size:12 final size:13

Alignment explanation


    Indices: 195--224  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        185 AAACAAACTC

                         
        195 CATGGTGGGTTCT
          1 CATGGTGGGTTCT

                         
        208 -ATGGTGGGTTCT
          1 CATGGTGGGTTCT

                 
        220 CATGG
          1 CATGG

        225 AAGCCTGTAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.10, C:0.13, G:0.40, T:0.37


Consensus pattern (13 bp):   
CATGGTGGGTTCT
Done.