Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00458.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1191
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27


Found at i:355 original size:57 final size:58

Alignment explanation


    Indices: 248--398  Score: 179
    Period size: 57  Copynumber: 2.7  Consensus size: 58

        238 TACTGGAGCC

                                                         *              
        248 ACTGTTGGCAACCCTGGTGTGGCTGCAGGTGCAGCCACTGGTCCCGTTCCCACAGGAACT
          1 ACTGTTGGCAACCCTGGTGTGGCTGC--GTGCAGCCACTGGTCCCATTCCCACAGGAACT

                    *                                               * *
        308 ACTGTTGGGAACCCTGGTGTAGG-TGC-TGCAGCCACTGGTCCCATTCCCACAGGACCC
          1 ACTGTTGGCAACCCTGGTGT-GGCTGCGTGCAGCCACTGGTCCCATTCCCACAGGAACT

             *     *                              
        365 AATGTTGCCAACCCT-G-GT-GCTG-GTGCAGCCACTG
          1 ACTGTTGGCAACCCTGGTGTGGCTGCGTGCAGCCACTG

        399 CTGACCACCC


Statistics
Matches: 81,  Mismatches: 7, Indels: 12
        0.81            0.07        0.12

Matches are distributed among these distances:
  53    1  0.01
  54   13  0.16
  55    2  0.02
  56    1  0.01
  57   40  0.49
  60   22  0.27
  61    2  0.02

ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22


Consensus pattern (58 bp):   
ACTGTTGGCAACCCTGGTGTGGCTGCGTGCAGCCACTGGTCCCATTCCCACAGGAACT
Done.