Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00465.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 367

Length: 613
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27


Found at i:587 original size:29 final size:29

Alignment explanation


    Indices: 551--609  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        541 ACTTGTCGGG

                                         
        551 TTACTTCAGTGTATCTGAAACTGCTTGTA
          1 TTACTTCAGTGTATCTGAAACTGCTTGTA

                                         
        580 TTACTTCAGTGTATCTGAAACTGCTTGTA
          1 TTACTTCAGTGTATCTGAAACTGCTTGTA

             
        609 T
          1 T

        610 CCGC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42


Consensus pattern (29 bp):   
TTACTTCAGTGTATCTGAAACTGCTTGTA
Done.